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  1. 1.
    MANOR::amplicon.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  2. 2.
    MANOR::chromosome.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  3. 3.
    MANOR::clone.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4. 4.
    MANOR::control.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  5. 5.
    MANOR::dapi.snr.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  6. 6.
    MANOR::dyn.x.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  7. 7.
    MANOR::dyn.y.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  8. 8.
    MANOR::dynamics.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  9. 9.
    MANOR::edge
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  10. 10.
    MANOR::edge.norm
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  11. 11.
    MANOR::global.spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  12. 12.
    MANOR::gradient
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  13. 13.
    MANOR::gradient.norm
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  14. 14.
    MANOR::intensity.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  15. 15.
    MANOR::local.spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  16. 16.
    MANOR::num.chromosome.flag
    Internal Functions for MANOR Package
    rda| rds
    flag
  17. 17.
    MANOR::pct.clone.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  18. 18.
    MANOR::pct.replicate.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  19. 19.
    MANOR::pct.spot.before.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  20. 20.
    MANOR::pct.spot.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  21. 21.
    MANOR::position.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  22. 22.
    MANOR::ref.snr.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  23. 23.
    MANOR::rep.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  24. 24.
    MANOR::replicate.aux
    Internal Functions for MANOR Package
    json| rda| rds
    function
  25. 25.
    MANOR::replicate.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  26. 26.
    MANOR::smoothness.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  27. 27.
    MANOR::SNR.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  28. 28.
    MANOR::spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  29. 29.
    MANOR::spot.corr.flag
    Internal Functions for MANOR Package
    rda| rds
    flag
  30. 30.
    MANOR::spot.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  31. 31.
    MANOR::unique.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  32. 32.
    MANOR::val.mark.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  33. 33.
    MANOR::var.replicate.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore