Clustering of Hi-C contact maps2 years ago
Introduction | Loading and displaying a sample Hi-C contact map | Using hicClust | Other types of input | References | Session information
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Inferring Linkage Disequilibrium blocks from genotypes2 years ago
Introduction | Loading and displaying genotype data | Adjacency-constrained Hierarchical Agglomerative Clustering | Output | Other types of input | References | Session information
Implementation notes for the adjclust package4 years ago
Notes on relations between similarity and dissimilarity implementation | Basic implementation of CHAC in adjclust | More advanced used for kernel or similarity matrices | Non positive but normalized similarities | Non normalized similarities | Case of dissimilarity data | Options for displaying the dendrogram | mode = "corrected" | mode = "total-disp" | mode = "within-disp" | mode = "average-disp" | Relations with 'hclust' and 'rioja' | References
